Welcome to Cpipe

New! : Cpipe is published in Genome Medicine!

Cpipe is an exome sequencing pipeline created by the Melbourne Genomics Health Alliane as part of a project to prototype clinical sequencing across multiple institutions in Australia. As part of the project, a pipeline was developed for analysis of exome and targeted sequencing data that is specialised for clinical purposes. Cpipe includes many features that are needed in clinical diagnostic settings, including:

To get started, visit the Github page or have a look at the User Manual. Need help? Join our Google Group to talk about Cpipe with other users.